PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09931.10
Common NameJCGZ_07707
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 251aa    MW: 27952.3 Da    PI: 5.6979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09931.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++ + +G+  +W + +++ g++R++k+c++rw++yl
    Jcr4S09931.10 14 RGPWSPEEDAALKRYLQTHGTAgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.366966IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-191261IPR009057Homeodomain-like
SMARTSM007171.7E-111364IPR001005SANT/Myb domain
PfamPF002494.8E-141462IPR001005SANT/Myb domain
SuperFamilySSF466891.88E-181586IPR009057Homeodomain-like
CDDcd001673.12E-91662No hitNo description
Gene3DG3DSA:1.10.10.602.3E-66287IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAALKRYLQ THGTAGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIF SLYNQMETET NCTFTFCDSF VNTKEGSSIL DSSTPPTNGV  120
GETLMDSSYD FPDYDYYSFN GLDLFDQDKA ASEIASRYPN KPPLQPRTTQ IVTSPPSCTA  180
ATILRDTPPD LLLSERLSTQ GTTCRFSFGL GPVVTPSHRD FLTLRSPLFT PAPNLGSDTT  240
CWDRAYHPTP N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347391e-154KM034739.1 Jatropha curcas clone JcMYB120 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077563.12e-58transcription factor MYB36
TrEMBLA0A067KD331e-175A0A067KD33_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.16e-50MYB family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]