PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09954.10
Common NameJCGZ_20102, LOC105643867
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 237aa    MW: 26234.2 Da    PI: 8.0333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09954.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116890123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  Jcr4S09954.10 68 YTCTFCRREFRSAQALGGHMNVH 90
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.7E-66595No hitNo description
SMARTSM003550.00666890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1576895IPR007087Zinc finger, C2H2
PfamPF139121.8E-56891IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MATELALLSL NHLHHRKQPQ QNQHQPNPTA WMWNPNKQTP EDDDSWEVKA FEEDTGNVMG  60
TTWPPRSYTC TFCRREFRSA QALGGHMNVH RRDRARLHRQ TVLQPTPPLP PGTISSSNSS  120
TFLIPTQEFS TNGGGLCLLY QLPNPNGVFT PTNISKASPI DPSPSTVLSI SPYPQIGQSL  180
TNNYQVINSS HYHSGRPEAA ASAAAINKNN SCKELAKEEV DLELRLGHRS TTSPSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-136390229superman protein
2l1o_A3e-136390229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084484.11e-177zinc finger protein 1
TrEMBLA0A067JUG61e-176A0A067JUG6_JATCU; Uncharacterized protein
STRINGcassava4.1_023237m3e-93(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-44C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]