PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09973.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HB-other
Protein Properties Length: 170aa    MW: 19514.2 Da    PI: 8.4954
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09973.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-2164119156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Jcr4S09973.10  64 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 119
                    688999***********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-2243119IPR009057Homeodomain-like
SuperFamilySSF466891.37E-2051119IPR009057Homeodomain-like
PROSITE profilePS5007116.82761121IPR001356Homeobox domain
SMARTSM003895.7E-1962125IPR001356Homeobox domain
CDDcd000868.52E-1864119No hitNo description
PfamPF000464.8E-1964119IPR001356Homeobox domain
PRINTSPR000314.8E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000314.8E-5101117IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGNPNFNFMS DMSFQHAFPP IIPKEESGLI MAGKEEMESG SGSEQVEDKS GNEQESSELQ  60
PPKKKRYHRH TARQIQEMEA LFKECPHPDD KQRMKLSQEL GLKPRQVKFW FQNRRTQMKV  120
TTALSLSSLL HAKWALGFTY SERDSQENAS ISNVFTKPII MSIVAKESHL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4973879e-42AY497387.1 Populus balsamifera subsp. trichocarpa microsatellite ORPM_030 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081064.11e-79homeobox-leucine zipper protein HDG5
SwissprotA2ZAI72e-36ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A067KEU82e-78A0A067KEU8_JATCU; Uncharacterized protein
STRINGXP_002518976.11e-66(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1882656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.14e-36homeobox-7