PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09994.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 352aa    MW: 40703.6 Da    PI: 8.5526
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09994.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000371437223
                   EETTTTEEESSHHHHHHHHHH..T CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                   kC  C + F+  ++L+ H+r+  H
  Jcr4S09994.10 14 KCAACFRQFNKMEHLVEHMRNsyH 37
                   6999****************8666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.0741342IPR007087Zinc finger, C2H2
PROSITE patternPS0002801537IPR007087Zinc finger, C2H2
SMARTSM004794.2E-7139302IPR013520Exonuclease, RNase T/DNA polymerase III
Gene3DG3DSA:3.30.420.103.2E-27139303IPR012337Ribonuclease H-like domain
SuperFamilySSF530987.01E-15174300IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDSRQESSET LRNKCAACFR QFNKMEHLVE HMRNSYHSVH EPTCRICKKH CRSFESLREH  60
LIGPLPKQEC KNIFSIRGCK FCLTILDSYN SRNMHQERCQ FSNSNAVFIF TLGLLARIAN  120
LGLRDNLLTV ENCYARAPQV VALACKMVGG GSDGSLDLCG RVCLIDRKGK YYLPXYETTG  180
IRSEYLRDAM PLRLVQSKLQ NFLCNGEPMW KIRPRGGGKA RILVGHGLDH DFDRLQLEYP  240
AVMVRDTAKY PPLMKTSKLS NSLKYLTQAY LGYEIQSGIQ DPYEDCVATM RLYMRMRSQR  300
HAVEDYPLAS DPQNRNNFAS WRQNELEKMS PEEMLAISRS DYYCWCLDSY LN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083314.10.0RNA exonuclease 4
TrEMBLA0A067LAC90.0A0A067LAC9_JATCU; Uncharacterized protein
STRINGcassava4.1_021733m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF257434