PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10070.40
Common NameJCGZ_05663
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 188aa    MW: 20758.3 Da    PI: 10.2452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10070.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00153456123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ F++   L  H  +H
  Jcr4S10070.40 34 FSCKTCNRKFPSFQALGGHRASH 56
                   89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.12E-832101No hitNo description
SMARTSM003550.23456IPR015880Zinc finger, C2H2-like
PfamPF139129.9E-113458IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7433461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
PfamPF139127.6E-1078103IPR007087Zinc finger, C2H2
SMARTSM003550.579101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.53679106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKRGREEEAM DMANCLMLLS KVGRTEEETT GRMFSCKTCN RKFPSFQALG GHRASHKKPK  60
LIGGELLKLP SSPPKPKTHE CSICGLEFAI GQALGGHMRR HRGVANNNMV GEELVTLGGH  120
MRRHRGVAND NMVGEELVTR SLFSVPIMKK SVSKRVLSLD LNLPPVENDL TLQLGKVVQS  180
PLVLNCFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532516.11e-135zinc finger protein ZAT12
TrEMBLA0A067L6W41e-134A0A067L6W4_JATCU; Uncharacterized protein
STRINGcassava4.1_017892m4e-76(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.19e-35C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]