PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10365.40
Common NameJCGZ_21334
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 185aa    MW: 22049.9 Da    PI: 4.4934
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10365.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +lv +++++G  +W+  ++  g+ R++k+c++rw +yl
    Jcr4S10365.40 14 KGTWSPEEDRKLVAYINRYGIWNWNEMPKAAGLSRSGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding31.25.2e-106797132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg++++eEde ++ ++++lG+  W++Ia++m+
    Jcr4S10365.40 67 RGNFSKEEDETILTLHEMLGNS-WSAIAKKMP 97
                     89******************99.********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.604965IPR017930Myb domain
SuperFamilySSF466892.8E-251199IPR009057Homeodomain-like
SMARTSM007179.8E-131363IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-241568IPR009057Homeodomain-like
CDDcd001675.65E-91661No hitNo description
PfamPF139216.3E-141776No hitNo description
PROSITE profilePS500907.3646299IPR017877Myb-like domain
SMARTSM007171.1E-466134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-1669124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLVIMEKREQ RLKKGTWSPE EDRKLVAYIN RYGIWNWNEM PKAAGLSRSG KSCRLRWMNY  60
LRPDIKRGNF SKEEDETILT LHEMLGNSWS AIAKKMPDQM WLQDSSIHGC EGTEYSLVRT  120
DNDLQIMEQE NFSLSGEFLQ LFDPMEVMED DWVTNPMWIE RSAYSYNSDI IEPENNFWDY  180
SPLWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1812100592B-MYB
1h8a_C3e-18129725109MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347081e-147KM034708.1 Jatropha curcas clone JcMYB088 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092400.21e-63myb-related protein Myb4
TrEMBLA0A067JDM63e-62A0A067JDM6_JATCU; MYB family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.17e-39myb domain protein 74
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]