PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10367.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family YABBY
Protein Properties Length: 163aa    MW: 17918.4 Da    PI: 9.8909
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10367.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY113.82.9e-35112831170
          YABBY  31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.senedeevprvppvirPPekrqrv 125
                    +f++vtvrCGhC++llsvn+  as ++   ++   s  +e++          +s + ++++ s+s+ ++    e+ d+e pr+pp irPPekrqrv
  Jcr4S10367.10   1 MFTLVTVRCGHCANLLSVNMGGASLQTFPPQD---SQSPEVQL---------NSEDLNKDCGSSSKCNKVTaFESADHEPPRMPP-IRPPEKRQRV 83 
                    699*****************998865544332...23333333.........3333333333333322222146788999**999.9********* PP

          YABBY 126 PsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                    Psaynrfik   + ++      +    fs+aaknWahfP+ihfgl
  Jcr4S10367.10  84 PSAYNRFIKKISKGLRLVILISATGKLFSTAAKNWAHFPHIHFGL 128
                    **********99999998887788899****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.0E-351128IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MFTLVTVRCG HCANLLSVNM GGASLQTFPP QDSQSPEVQL NSEDLNKDCG SSSKCNKVTA  60
FESADHEPPR MPPIRPPEKR QRVPSAYNRF IKKISKGLRL VILISATGKL FSTAAKNWAH  120
FPHIHFGLKL DGNNKHAKLD HQAFAGEGTQ KSSNGFYEIN GTL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066366.11e-93putative axial regulator YABBY 2 isoform X1
RefseqXP_012066367.11e-93putative axial regulator YABBY 2 isoform X1
RefseqXP_020533146.14e-94putative axial regulator YABBY 2 isoform X2
RefseqXP_020533147.14e-94putative axial regulator YABBY 2 isoform X2
RefseqXP_020533148.14e-94putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB03e-50YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A067LEN23e-92A0A067LEN2_JATCU; Uncharacterized protein
STRINGPOPTR_0001s22180.12e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-43YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]