PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10464.20
Common NameJCGZ_15342, LOC105640186
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 190aa    MW: 21877.9 Da    PI: 9.0244
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10464.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-19124158135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    Cs+C+t kTp+WR gp g+ktLCnaCG++yr+ +l
  Jcr4S10464.20 124 CSHCQTDKTPQWRIGPLGPKTLCNACGVRYRSGRL 158
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.2E-14118172IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.622118154IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14121155IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.37E-13121175No hitNo description
CDDcd002021.11E-13123165No hitNo description
PfamPF003202.2E-17124158IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAVIYNDAYD ISDLPDLDLD DYTTGLCIPQ DPIEELEWFP SFSSDLISLN DLRLTPEHEP  60
LALIDFEASE KQRGLGKVLN GYRAFPRKKQ RSRRVLKQRR HRGWSSMELA ESDDGVFRVE  120
KRRCSHCQTD KTPQWRIGPL GPKTLCNACG VRYRSGRLVA EYRPACSPTF NSLQHSNFHK  180
KILKRKGILA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692RKKQRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079822.11e-122GATA transcription factor 9
TrEMBLA0A067K5Q91e-120A0A067K5Q9_JATCU; Uncharacterized protein
STRINGEOX926221e-44(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1634779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-37GATA transcription factor 4
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]