PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S10510.10

Common Name

JCGZ_21706, LOC105649782

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 29416.8 Da PI: 4.4622

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S10510.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	28	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++ q+e Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k+ Jcr4S10510.10 28 KKRRLSAGQVEFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKN 82 5568999*********************************************995 PP
2	HD-ZIP_I/II	128	3.9e-41	28	118	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+ qv++LE++Fe e+kLeperK +la+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++yd+lk++ + L ke+++L++++ Jcr4S10510.10 28 KKRRLSAGQVEFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKNKQLEKDYDSLKASYDKLKSDYAILLKEKDNLKNQIV 118 9**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-19	19	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.779	23	83	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	25	87	IPR001356	Homeobox domain
CDD	cd00086	6.62E-16	26	84	No hit	No description
Pfam	PF00046	9.1E-16	28	81	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-19	30	91	IPR009057	Homeodomain-like
PRINTS	PR00031	5.0E-6	54	63	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	58	81	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.0E-6	63	79	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.5E-16	83	124	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDAEFFQPLI KEENGDEDFD VCFNPPGKKR RLSAGQVEFL ERNFEVENKL EPERKIQLAK 60 ELGLQPRQVA IWFQNRRARF KNKQLEKDYD SLKASYDKLK SDYAILLKEK DNLKNQIVSL 120 KEKMLAREKG RENLGPTLDA INSSKAEVDQ NPVANTVSEV VSSEQTVMIF IKQEDASSVK 180 SDVFDSDSPH SFLEPADSSH VLEPEQSDFS QDEEDDLSRS LLPPPYFPKL YHDPPANSCS 240 FEFPVEDQPF WSWTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARFKNKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091954.1	0.0	homeobox-leucine zipper protein ATHB-54
TrEMBL	A0A067JML6	0.0	A0A067JML6_JATCU; Uncharacterized protein
STRING	cassava4.1_012634m	1e-136	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-40	homeobox 1

Link Out ? help Back to Top
Entrez Gene	105649782

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]