PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10824.20
Common NameJCGZ_17894
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 161aa    MW: 18768.8 Da    PI: 4.87
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10824.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171053146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w++
    Jcr4S10824.20 10 RGALTEAEEDQIIELHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 53
                     7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-16165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-25160IPR009057Homeodomain-like
PROSITE profilePS5129427.354559IPR017930Myb domain
SMARTSM007171.5E-15957IPR001005SANT/Myb domain
PfamPF002496.0E-161053IPR001005SANT/Myb domain
CDDcd001679.57E-111453No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MNYLRPDLKR GALTEAEEDQ IIELHSRLGN RWSKIAAHFP GRTDNEIKNH WNTRIKKKLK  60
ILGIDPQTHK RIDTEEAETS KEESKVKDYQ IESESLRKEF DAGSVLNSCT DKSESFCSRI  120
EESVIKEESQ QNWIDNVDSL LSWDGFNNLE EIFPFDSHQL C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1525951108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0175530.0KM017553.1 Jatropha curcas isolate A MYB117 (MYB117) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292961.11e-113myb-related protein 315
SwissprotP813948e-41MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A067JS301e-112A0A067JS30_JATCU; MYB family protein
STRINGcassava4.1_021041m4e-52(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-37myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]