PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11072.30

Common Name

JCGZ_17282

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Protein Properties

Length: 219aa MW: 24760.8 Da PI: 9.5454

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11072.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.4	8.1e-16	142	211	15	90
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + lp +f+++h k ++ +++lede+g + + k+ +k+++ l++GW++F+ +++L++gD vvF+l+++++f Jcr4S11072.30 142 SMGLPTQFCKDHLPK--KDLDMILEDENGSTCDAKY--LGKRNG--LSGGWRGFALDHKLDDGDAVVFELVESDRF 211 488*******544..5669***********..777777..9********************9976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.644	128	219	IPR003340	B3 DNA binding domain
CDD	cd10017	3.11E-18	132	212	No hit	No description
SuperFamily	SSF101936	1.67E-17	133	211	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-16	137	212	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	5.6E-11	139	213	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.2E-14	142	211	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAIENGNSNT YEEARKQRVK ENKKRFEDLG ISNISKSLSK LSSPEKKSKQ RLPKPKSEGT 60 EAFELRRSSR ARNTVTSYLD DLDIDLPSLR KRSRSNSSWK SYVARPLEEV KLASYEDRAL 120 ALRAAEEFQS GLQSGNPSFV KSMGLPTQFC KDHLPKKDLD MILEDENGST CDAKYLGKRN 180 GLSGGWRGFA LDHKLDDGDA VVFELVESDR FKGFNILNF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077831.1	1e-143	putative B3 domain-containing protein At5g58280
Refseq	XP_012077836.1	1e-143	putative B3 domain-containing protein At5g58280
Refseq	XP_020536872.1	1e-143	putative B3 domain-containing protein At5g58280
Refseq	XP_020536875.1	1e-143	putative B3 domain-containing protein At5g58280
Refseq	XP_020536878.1	1e-143	putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	4e-52	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A067LLN2	1e-148	A0A067LLN2_JATCU; Uncharacterized protein
STRING	VIT_06s0004g08270.t01	5e-92	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12433	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-43	B3 family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]