PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11107.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 135aa    MW: 15650.8 Da    PI: 10.0307
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11107.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-081242448
                     HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                     W++Ia +++ gRt++++k++w++++
    Jcr4S11107.10  1 WSLIAGRLP-GRTANDVKNFWNTHM 24
                     *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001675.52E-5124No hitNo description
Gene3DG3DSA:1.10.10.604.8E-11139IPR009057Homeodomain-like
SuperFamilySSF466891.79E-7138IPR009057Homeodomain-like
PROSITE profilePS5129416.307128IPR017930Myb domain
PfamPF002496.1E-6123IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
WSLIAGRLPG RTANDVKNFW NTHMRKKLKP SNPYCEEDNE KGKTVKIIKP RPCKISKIIS  60
LFTATAKNKD HHQNENGSNS EKVPPHSLKG RAVVTNENDW WSDFSSDKEI WNLFFSKEQE  120
VITFDLKVKF VFTTD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346951e-89KM034695.1 Jatropha curcas clone JcMYB075 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080578.22e-59transcription factor MYB114 isoform X2
TrEMBLA0A067K8U11e-50A0A067K8U1_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.16e-13myb domain protein 114