PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11428.30

Common Name

JCGZ_19919, LOC105644140

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 543aa MW: 61730.2 Da PI: 6.8721

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11428.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+ksF + +L H+r H Jcr4S11428.30 9 HACKLCNKSFLSGRLLSGHMRIH 31 67*******************99 PP
2	zf-C2H2	13.8	0.00017	84	105	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F ++ +L+ H+r + Jcr4S11428.30 84 QCRVCGKQFESQRSLHGHMRHC 105 8*******************87 PP
3	zf-C2H2	17.1	1.5e-05	113	133	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ F++ +L+ H+r+H Jcr4S11428.30 113 CKECGRGFKTLRSLTGHMRLH 133 99*****************99 PP
4	zf-C2H2	11	0.0014	383	405	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs++ L H+ H Jcr4S11428.30 383 FRCKICNKLFSSHQALGGHQTFH 405 89**************9999877 PP
5	zf-C2H2	11.4	0.00098	458	480	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C++sF + L H r H Jcr4S11428.30 458 YKCDICSRSFISGQALGGHKRAH 480 9************9999999995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.5E-6	5	32	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-5	6	31	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.097	9	31	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.017	9	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.04	9	31	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.06E-9	83	133	No hit	No description
SMART	SM00355	4.8	83	104	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.723	83	109	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.0027	84	104	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.489	111	138	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	111	133	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.0E-5	112	135	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	133	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.9E-5	113	135	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	383	410	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.2E-6	383	406	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	383	405	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.63E-8	383	405	No hit	No description
PROSITE pattern	PS00028	0	385	405	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.63E-8	453	480	No hit	No description
Pfam	PF13912	3.7E-11	458	482	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	458	480	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.593	458	486	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	460	481	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MDQDQEKKHA CKLCNKSFLS GRLLSGHMRI HVLAGKGSAK EEINLENGNM GIEGYGLREN 60 PKKSWKFSGL KNDNGTESVE EIMQCRVCGK QFESQRSLHG HMRHCSEKKG ICCKECGRGF 120 KTLRSLTGHM RLHSDKYRVS TKESRTSSSR PNLVVMALSD TDTVSLVRKK RSNRIRYKVT 180 PNSSFSSLNE SISGFEVEQE VEEVAMCLMM LSRGVCDWDE FKSVSESLDN GSVYSGDKSL 240 YQNKRNERSE DGDCVFEGNE FFKKKKPRGD NLDPFVSDSK DLTYECSKLK FPIGSFYQEI 300 DSKKLKLEEE FGFLPCDTDE IEKGIEDEID SNRIESESTQ EFTQEVDLGS LDAELVKDDS 360 YTEIISSTSD FDNVDNSKKK SQFRCKICNK LFSSHQALGG HQTFHRTTRN SVVLKIEQRQ 420 EIQSNCLPEK IVCIKDSVEE EVNRVTVTSN RSKKRQEYKC DICSRSFISG QALGGHKRAH 480 HSKPKEEQSM AIKEEAHNPN ISNALHINLR DMLDEENSHE IGFNSCWGVS SYKHDPLLNL 540 VAN

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MDQDQEKKHA CKLCNKSFLS GRLLSGHMRI HVLAGKGSAK EEINLENGNM GIEGYGLREN  60
PKKSWKFSGL KNDNGTESVE EIMQCRVCGK QFESQRSLHG HMRHCSEKKG ICCKECGRGF  120
KTLRSLTGHM RLHSDKYRVS TKESRTSSSR PNLVVMALSD TDTVSLVRKK RSNRIRYKVT  180
PNSSFSSLNE SISGFEVEQE VEEVAMCLMM LSRGVCDWDE FKSVSESLDN GSVYSGDKSL  240
YQNKRNERSE DGDCVFEGNE FFKKKKPRGD NLDPFVSDSK DLTYECSKLK FPIGSFYQEI  300
DSKKLKLEEE FGFLPCDTDE IEKGIEDEID SNRIESESTQ EFTQEVDLGS LDAELVKDDS  360
YTEIISSTSD FDNVDNSKKK SQFRCKICNK LFSSHQALGG HQTFHRTTRN SVVLKIEQRQ  420
EIQSNCLPEK IVCIKDSVEE EVNRVTVTSN RSKKRQEYKC DICSRSFISG QALGGHKRAH  480
HSKPKEEQSM AIKEEAHNPN ISNALHINLR DMLDEENSHE IGFNSCWGVS SYKHDPLLNL  540
VAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084801.1	0.0	zinc finger protein 91
TrEMBL	A0A067K4S1	0.0	A0A067K4S1_JATCU; Uncharacterized protein
STRING	cassava4.1_004354m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13359	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-19	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	105644140

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]