PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11523.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

ERF

Protein Properties

Length: 825aa MW: 92394.9 Da PI: 7.0945

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11523.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56	9.9e-18	93	142	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +g ++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ +++g Jcr4S11523.10 93 YIGVRRRP-WGTYAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFEMRG 142 89****.*******9998..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.3E-35	92	156	IPR001471	AP2/ERF domain
CDD	cd00018	7.44E-28	92	152	No hit	No description
Gene3D	G3DSA:3.30.730.10	8.3E-30	92	151	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.484	92	150	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-10	93	104	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-21	93	151	IPR016177	DNA-binding domain
Pfam	PF00847	2.0E-11	93	142	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-10	132	152	IPR001471	AP2/ERF domain
Pfam	PF14223	1.4E-15	282	357	No hit	No description
Pfam	PF07727	3.0E-5	790	825	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence Send to blast
MQVQSSSGSM LTSLLESIRN HLLADDFEDP CTATASLLSY TSEWFSSLQL NSVNELSMVV 60 EQESPSIDVG SKAAVPVPVA RPNHTPPLRR RNYIGVRRRP WGTYAAEIRD PKKNGARVWL 120 GTYETPEDAA VAYDRAAFEM RGSKAKLNFP HLIGSDNVEP ARLSHKRRVP ESSSLAVKSS 180 GSPKRRKGNK NPVEELQYGV EPLFLGDQSM VNSIVCDASI SNTFTLVYLE FDMANDGAMI 240 KLTDSNYSMW KSRMEDYLNC KDLYDPIKGD SAKPEEMKER QWDKLKKQAL GKVFMIRKVM 300 NLKLSEGRSV TQHLNDFEGL VAELAVSGMS LDDEMQACLL LGFLPDSWDT LVSYEEETSP 360 VPVHKPLSQR IGAGARVEVT GMKSQVDNVN RRQENDRNTS ATVSVEDGEV TLVTHDADCC 420 HVGDADTEWI LDSGASYHCV PKMKYFFTYK AGDFGTIRTG NKSLSQMVGI GNVCIKTSVG 480 CTLILKNVRL IPDLRLNLLS VSVLDKEGYH HHIGDVANDA SPNLGRRWLA HVSEKGSNML 540 AKKSLIPLAK GKKNPCDHCI FGKQHRVSFQ KSSRRRDNKL KMANLSKPFW EESVNTAVYL 600 INRLPSAPLD FDIPEKVWTC KNISYSHLRV FGCKAFMHVP KEQRSKLDDK SVPCTFVDTT 660 CKESTSDGVI DITLGSIPID DVTRGGMPES EREEEEKPVM GDQETIVDDN NDAEGIEKGE 720 PENPVPPEGV EPQLRRSTRE CQPSTKYLSS DYILISDEGE PKSFQDVQSC KDKDCWTKAM 780 QEEMNSLKKN DTYKLVKLPK GKRTLKNKWV HKLKKDDGNL VRYKA

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence Send to blast

MQVQSSSGSM LTSLLESIRN HLLADDFEDP CTATASLLSY TSEWFSSLQL NSVNELSMVV  60
EQESPSIDVG SKAAVPVPVA RPNHTPPLRR RNYIGVRRRP WGTYAAEIRD PKKNGARVWL  120
GTYETPEDAA VAYDRAAFEM RGSKAKLNFP HLIGSDNVEP ARLSHKRRVP ESSSLAVKSS  180
GSPKRRKGNK NPVEELQYGV EPLFLGDQSM VNSIVCDASI SNTFTLVYLE FDMANDGAMI  240
KLTDSNYSMW KSRMEDYLNC KDLYDPIKGD SAKPEEMKER QWDKLKKQAL GKVFMIRKVM  300
NLKLSEGRSV TQHLNDFEGL VAELAVSGMS LDDEMQACLL LGFLPDSWDT LVSYEEETSP  360
VPVHKPLSQR IGAGARVEVT GMKSQVDNVN RRQENDRNTS ATVSVEDGEV TLVTHDADCC  420
HVGDADTEWI LDSGASYHCV PKMKYFFTYK AGDFGTIRTG NKSLSQMVGI GNVCIKTSVG  480
CTLILKNVRL IPDLRLNLLS VSVLDKEGYH HHIGDVANDA SPNLGRRWLA HVSEKGSNML  540
AKKSLIPLAK GKKNPCDHCI FGKQHRVSFQ KSSRRRDNKL KMANLSKPFW EESVNTAVYL  600
INRLPSAPLD FDIPEKVWTC KNISYSHLRV FGCKAFMHVP KEQRSKLDDK SVPCTFVDTT  660
CKESTSDGVI DITLGSIPID DVTRGGMPES EREEEEKPVM GDQETIVDDN NDAEGIEKGE  720
PENPVPPEGV EPQLRRSTRE CQPSTKYLSS DYILISDEGE PKSFQDVQSC KDKDCWTKAM  780
QEEMNSLKKN DTYKLVKLPK GKRTLKNKWV HKLKKDDGNL VRYKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-28	91	150	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	186	KRRVPESSSLAVKSSGSPKRRK
2	282	287	DKLKKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P10978	4e-58	POLX_TOBAC; Retrovirus-related Pol polyprotein from transposon TNT 1-94

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-41	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Grandbastien MA,Spielmann A,Caboche M Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature, 1989. 337(6205): p. 376-80 [PMID:2536143]