PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11523.20
Common NameJCGZ_14624, LOC105643372
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 197aa    MW: 22517.4 Da    PI: 7.8688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11523.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19110161255
            AP2   2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIr+p++ ng  +r +lg++ t+eeAa a+++a+ k++g
  Jcr4S11523.20 110 HYRGVRRRP-WGKFAAEIREPRTkNG--ARLWLGTYETPEEAALAYDRAAFKIRG 161
                    69*******.**********877687..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-14110161IPR001471AP2/ERF domain
PROSITE profilePS5103224.223110169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-30110170IPR001471AP2/ERF domain
SMARTSM003803.6E-38110175IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22110170IPR016177DNA-binding domain
CDDcd000181.00E-31110171No hitNo description
PRINTSPR003671.2E-13111122IPR001471AP2/ERF domain
PRINTSPR003671.2E-13151171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MHAQSISDLV FLQPIKHQFE APASFDHLYS SFLTENWGDL PLKLDDSEDM IVYDALRDAV  60
NVGWSPSYES DNKAIEVVEE VVRAPKRTVP LEADRESKKN TLPQKRNAMH YRGVRRRPWG  120
KFAAEIREPR TKNGARLWLG TYETPEEAAL AYDRAAFKIR GSKAKLNFPH LVGSDERESS  180
PSMSDNDSVT KKRKLIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-29110176570ATERF1
3gcc_A1e-29110176570ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083859.11e-145ethylene-responsive transcription factor 1
SwissprotQ404765e-53ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A067K1E31e-143A0A067K1E3_JATCU; Uncharacterized protein
STRINGEOX964598e-63(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.19e-55ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]