PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11566.10
Common NameJCGZ_06908, LOC105634596
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 110aa    MW: 12042.7 Da    PI: 7.3697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11566.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.42.7e-141337226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   ++ +C+f+++tG+Ck+G+rCkF+H+
  Jcr4S11566.10 13 GQTECDFYMKTGECKFGERCKFHHP 37
                   7789********************8 PP
2zf-CCCH42.69.7e-146788627
                   -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                   C+++++tGtCkyG++CkF H+p
  Jcr4S11566.10 67 CPYYMKTGTCKYGATCKFDHPP 88
                   ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.9E-81040IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-71138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4411139IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-121337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-61737IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6666189IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-66188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-76588IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-116788IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-66786IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
LGVGSIIYPQ RPGQTECDFY MKTGECKFGE RCKFHHPINR SAPTQAEQQA VKLTLAGLPR  60
REGAVHCPYY MKTGTCKYGA TCKFDHPPPG EVMAISASQG ISSFDGEDDV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072859.13e-76zinc finger CCCH domain-containing protein 37 isoform X3
RefseqXP_020535119.11e-76zinc finger CCCH domain-containing protein 37 isoform X4
SwissprotQ941Q34e-48C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A067KR253e-73A0A067KR25_JATCU; Uncharacterized protein
STRINGcassava4.1_005754m4e-59(Manihot esculenta)
STRINGcassava4.1_024432m2e-60(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-50floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]