PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11637.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 315aa    MW: 34891.9 Da    PI: 7.1273
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11637.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1241.3e-38151161103
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrFhPtdeelvv+yLk+k+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl+++
  Jcr4S11637.10  15 LPPGFRFHPTDEELVVHYLKRKASSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPVLTSG 109
                    79****************************.88***************988899***************************************986 PP

            NAM  97 gelvglk 103
                    g+++ +k
  Jcr4S11637.10 110 GTQKITK 116
                    6665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-479146IPR003441NAC domain
PROSITE profilePS5100538.86115168IPR003441NAC domain
PfamPF023657.2E-1916129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESTDSSSGS QQPNLPPGFR FHPTDEELVV HYLKRKASSA PLPVAIIAEV DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGVRPNRA ATSGYWKATG TDKPVLTSGG TQKITKYNNK  120
PPGCDLGNKK NSLRLDDWVL CRIYKKNNTH RPLDHDKDDS VDDMLGLIPP SISVGNTNNN  180
SQQNAKLQFL KGTNYGLLVE NEQNCLFEGM MHNGEINQMG SSNRPGELSV LPLKRTLPSL  240
YWNEEIDAAG ASSSKRYQAD SGDGSVVRND GNGSIASLLS QLPQTPPLHQ QTALGSLGDG  300
IYRPPFQFSG LNWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-561414814170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4544620.0KM454462.1 Jatropha curcas NAC2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070614.10.0NAC transcription factor 56
SwissprotQ9LD441e-103NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A0H3WLD10.0A0A0H3WLD1_JATCU; NAC2
STRINGcassava4.1_010976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-99NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ni J, et al.
    Gibberellin Promotes Shoot Branching in the Perennial Woody Plant Jatropha curcas.
    Plant Cell Physiol., 2015. 56(8): p. 1655-66
    [PMID:26076970]