PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11643.10

Common Name

JCGZ_14655, LOC105643241

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 164aa MW: 18623.7 Da PI: 7.5605

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11643.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.6	6.8e-23	42	133	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+++W+ev++++ ++++qC++k+e+l+kry+ + +++++ s+ ss++++f++++a Jcr4S11643.10 42 CWSHDETVALIDAYRDKWYTLRRGNLKANHWQEVADAVarrcPTASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFSSSWVHFKRMDA 133 8*********************************995443444558999*******************9789**********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.9E-24	41	134	No hit	No description
PROSITE profile	PS50090	6.098	43	103	IPR017877	Myb-like domain
SMART	SM00595	1.1E-14	50	139	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSATAAGSPS HQDSTLLPSN PIPALPAPPQ PSTNPRRLPP PCWSHDETVA LIDAYRDKWY 60 TLRRGNLKAN HWQEVADAVA RRCPTASPPK TAVQCRHKME KLRKRYRTEI QRARSMPVSR 120 FSSSWVHFKR MDAMEKGPQA KADFNSESDG EDNEEENEED DDNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083724.1	1e-121	trihelix transcription factor ASIL2
TrEMBL	A0A067KAP1	1e-119	A0A067KAP1_JATCU; Uncharacterized protein
STRING	cassava4.1_010599m	2e-86	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-59	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105643241

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]