PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11849.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 156aa MW: 18006.8 Da PI: 10.0154

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11849.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.4	1.6e-40	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCa+Ck++rrkC+k+C+lapyfpa+q+++f+n+++lFG++n+lk+lk+++++e++++m+s++ye+++rar Pv+G++g+il+lq q eq+k+++ + Jcr4S11849.10 14 ACAVCKYQRRKCTKECALAPYFPADQQRTFRNARRLFGVHNILKILKQVKDDEKDETMRSIIYESNMRARFPVHGCLGIILHLQYQAEQVKQQILH 109 7********************************************************************************************998 PP DUF260 97 lkee 100 +k++ Jcr4S11849.10 110 AKRQ 113 8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.839	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-37	14	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MMKKEDTIPK TSQACAVCKY QRRKCTKECA LAPYFPADQQ RTFRNARRLF GVHNILKILK 60 QVKDDEKDET MRSIIYESNM RARFPVHGCL GIILHLQYQA EQVKQQILHA KRQIEICKKH 120 QCDGFVNSDG IGTRTGIGTA KGKKSDDIVE PRRNQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-23	6	114	3	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-23	6	114	3	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020538028.1	1e-111	LOB domain-containing protein 25-like
TrEMBL	A0A1Q3DC13	1e-46	A0A1Q3DC13_CEPFO; DUF260 domain-containing protein (Fragment)
STRING	XP_008459693.1	5e-48	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4415	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-34	LOB domain-containing protein 27