PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11889.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 141aa    MW: 16006.8 Da    PI: 7.129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11889.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-052244123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C+k Fs+   L  H+++H
  Jcr4S11889.10 22 YSCSFCKKGFSNAQALGGHMNVH 44
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.46E-71948No hitNo description
Gene3DG3DSA:3.30.160.603.1E-52046IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0062244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6142249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEINQSKQTI WSSGELQSAR SYSCSFCKKG FSNAQALGGH MNVHRKDRAK LRQAPDDDDE  60
NLLSLDIAKS NQPDHILSKD KNLCTEEEDE AEAEDKNKKK KMQFSSHGST AGRIEVLDLE  120
LRLGPDKHHQ TSTDKTKRQF F
Functional Description ? help Back to Top
Source Description
UniProtActivation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075031.11e-101transcriptional regulator TAC1
SwissprotQ9SR344e-21TAC1_ARATH; Transcriptional regulator TAC1
TrEMBLA0A067KHT65e-67A0A067KHT6_JATCU; Uncharacterized protein
STRINGcassava4.1_030622m3e-28(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-18C2H2 family protein
Publications ? help Back to Top
  1. Ren S,Johnston JS,Shippen DE,McKnight TD
    TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis.
    Plant Cell, 2004. 16(11): p. 2910-22
    [PMID:15486103]
  2. Ren S,Mandadi KK,Boedeker AL,Rathore KS,McKnight TD
    Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1.
    Plant Cell, 2007. 19(1): p. 23-31
    [PMID:17220202]