PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11906.10

Common Name

JCGZ_10561

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 199aa MW: 22531.3 Da PI: 6.3828

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11906.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.3	5.3e-26	89	142	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 p lrWt+ LH+rFv+ ve LGGse+A P ++l lm+v++Ltl++vkSHLQ+YR+ Jcr4S11906.10 89 PGLRWTTSLHARFVHSVELLGGSERASPMSVLCLMDVPDLTLAQVKSHLQMYRT 142 569**************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-12	86	145	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-23	87	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-18	90	142	IPR006447	Myb domain, plants
Pfam	PF06839	9.9E-7	153	196	IPR010666	Zinc finger, GRF-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDCFVFHEEN SVQTHPATSL STTDTFSSAT NSVSLNSFSY SNSTPDYSLT IDTAESCTGS 60 VEEEVQAPAE FYKSFPSSPI LKQRSMRAPG LRWTTSLHAR FVHSVELLGG SERASPMSVL 120 CLMDVPDLTL AQVKSHLQMY RTVKQQELMK PRFCHCGTPC WVRTSRTEWN PGWKFVACEN 180 RKHDRSQGCD YFEWIDPVI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020536112.1	1e-101	transcription factor BOA isoform X2
TrEMBL	A0A067KF01	1e-144	A0A067KF01_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4463	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-30	G2-like family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]