PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11969.10
Common NameJCGZ_01394
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 229aa    MW: 26127.2 Da    PI: 8.373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11969.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000125678123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  Jcr4S11969.10 56 YSCSFCKREFRSAQALGGHMNVH 78
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.7E-65383No hitNo description
PROSITE profilePS5015711.245683IPR007087Zinc finger, C2H2
SMARTSM003550.0065678IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-65679IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEQTQYLMWM KRRSQFLKSK FQVWQNSVNE FSWEEKAFAE DASGSLGGCI WPPRCYSCSF  60
CKREFRSAQA LGGHMNVHRR DRARLKQNHE NFQFHQTQTQ NYNNLILNST SSNIVTSPSS  120
SSRISALSTQ ENINDTKPVK NPREEDSRSL SDHDGFVEAE LFKGFNSLIG SNGDNSCKRP  180
KTAISTVSFL IKPCSSDRYS LQPEVIEAKS VSMEDIDLEL RLGEPPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-135178229superman protein
2l1o_A9e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091230.11e-172probable transcriptional regulator RABBIT EARS
TrEMBLA0A067LKM81e-163A0A067LKM8_JATCU; Uncharacterized protein
STRINGXP_002524213.14e-93(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-27zinc-finger protein 10
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]