PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S12236.10
Common NameJCGZ_06329, LOC105635035
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 245aa    MW: 26260.2 Da    PI: 4.5139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S12236.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-1956106155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  Jcr4S12236.10  56 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAMSIKG 106
                    68*****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1356106IPR001471AP2/ERF domain
PROSITE profilePS5103223.27557114IPR001471AP2/ERF domain
SMARTSM003801.0E-3557120IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2157114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-3257115IPR001471AP2/ERF domain
PRINTSPR003678.8E-115869IPR001471AP2/ERF domain
CDDcd000185.33E-3158115No hitNo description
PRINTSPR003678.8E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSEESTSSNS SSSPLPSPSL PTTAAVGTAI SKSKIIQEPV EKKAPKRARD NSSKHPVYRG  60
VRMRSWGKWV SEIREPRKKS RIWLGTFPTA EMAARAHDVA AMSIKGNAAI LNFPEIVDSL  120
PRPVSLMPRD IQAAAAKAAS MVEFNSLSSS SSSSSLLSES SSSSSSSSVS VSDDVSESEE  180
LSEIVELPNI EGSFDSAESV TEFILFDSVD GWVYPPPQDM CGEFSDQLMG LESLISSNFG  240
ASVWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2148115573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073419.11e-172dehydration-responsive element-binding protein 3
SwissprotQ9LYD34e-68DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A067KQN01e-170A0A067KQN0_JATCU; Uncharacterized protein
STRINGcassava4.1_032457m2e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-62ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]