PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S12353.20

Common Name

JCGZ_27010, LOC105630334

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 260aa MW: 29075 Da PI: 9.5632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S12353.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Jcr4S12353.20 101 FSCNYCQRKFYSSQALGGHQNAH 123 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.24E-6	98	128	No hit	No description
PROSITE profile	PS50157	11.427	101	128	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	103	123	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEPPKSDSET SVSDNASSQK PFTESQKKAK DQEEKKQKQR QDQEDHLVLD LSLCSKDSKQ 60 ELNLIDSFEM GSSQKSFLDS SNNNESDDQQ QQQQQQQHRV FSCNYCQRKF YSSQALGGHQ 120 NAHKRERTLA KRGQRSFINI SSANSYRYSS MGSLPLHGSF NRSLGIQVHS LIHKPAFYGQ 180 NGWSRQPIVQ QPAVASFNIG NSGFGSASSN GTAKFETSRK FSPIKEGFAG FWWDIAGGGG 240 GSHLKTKQDD LQKLDLSLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067528.1	0.0	zinc finger protein 1
TrEMBL	A0A067L0N6	0.0	A0A067L0N6_JATCU; Uncharacterized protein
STRING	XP_002527314.1	6e-96	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-40	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105630334

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]