PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S12776.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 230aa MW: 25302.5 Da PI: 10.3739

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S12776.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.2	2.7e-25	53	155	4	105
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......kaaks 93 k r++++h kv+gRd RvR++a+caar+F+L++eLG+ ++++tieWLl p+ t++ s c +++ + +a+nss + + Jcr4S12776.10 53 NKPRSKDRHKKVEGRDTRVRIPADCAARIFQLTRELGHRTNGQTIEWLLDHVPPSHFPSRATPAVSVATC-DDNLRITAKNSSLHdvpstnA---- 143 699****************************************************999888855555455.333333333333332221110.... PP TCP 94 aakskksqksaa 105 + k++k+++ ++ Jcr4S12776.10 144 SLKQSKPKNIES 155 112222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	19.638	57	111	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.7E-20	57	144	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVSQAISIGP PQIFTDFPKT QQLLPQTSTT TTATTPATGT ITTKTQELLF NLNKPRSKDR 60 HKKVEGRDTR VRIPADCAAR IFQLTRELGH RTNGQTIEWL LDHVPPSHFP SRATPAVSVA 120 TCDDNLRITA KNSSLHDVPS TNASLKQSKP KNIESSNSSG NASGGIFQYS NFLDSSLLPT 180 PAPPTRTPRM GDQERNRKEL RGESEFLPGK DGNLPTISFT SLLMQLQREP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012064755.2	1e-168	transcription factor TCP11-like isoform X2
Refseq	XP_012064756.2	1e-168	transcription factor TCP11-like isoform X1
TrEMBL	A0A2C9W033	7e-60	A0A2C9W033_MANES; Uncharacterized protein
STRING	cassava4.1_022504m	1e-60	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22597	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-22	TCP family protein