PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S12858.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 184aa    MW: 21295.5 Da    PI: 4.548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S12858.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-191153145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++W++eEde+l++a+++ G++ W+ Ia++++ gRt++ +k++w+
    Jcr4S12858.10 11 KDAWSEEEDEILIEAHQKIGNR-WAEIAKRLP-GRTENTIKNHWN 53
                     689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.655660IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-20859IPR009057Homeodomain-like
SuperFamilySSF466895.67E-17863IPR009057Homeodomain-like
SMARTSM007175.6E-171058IPR001005SANT/Myb domain
PfamPF002491.5E-171153IPR001005SANT/Myb domain
CDDcd001679.68E-141356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MIFGNVINVQ KDAWSEEEDE ILIEAHQKIG NRWAEIAKRL PGRTENTIKN HWNATKRRQF  60
SIRRKGKESN SRGTLLQSYI KTLTTHDQDQ KNNYSESSFS SPFVSDQLNA WTTDYYDYIS  120
EVLNVSLEAN NLFDDNSYGF GVEESQMQYE MAMELDSLIK GTTTSDEARK EMDLLEMITQ  180
GTQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A1e-20760154MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A1e-20760154MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346380.0KM034638.1 Jatropha curcas clone JcMYB018 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534745.11e-124transcription factor MYB118-like
TrEMBLA0A067LGF91e-122A0A067LGF9_JATCU; MYB family protein
STRINGcassava4.1_028573m7e-51(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-32myb domain protein 98