PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S12990.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 157aa    MW: 17106.3 Da    PI: 7.611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S12990.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+++v+++G+g Wk I +        + R+  ++k++w+++
    Jcr4S12990.10  5 KQKWTAEEEEALLNGVAKHGPGKWKNILKDPDfapflTQRSNIDLKDKWRNL 56
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.067161IPR017930Myb domain
SuperFamilySSF466898.61E-17263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-16457IPR009057Homeodomain-like
SMARTSM007171.3E-7459IPR001005SANT/Myb domain
PfamPF002492.8E-10556IPR001005SANT/Myb domain
CDDcd116603.17E-21656No hitNo description
SuperFamilySSF467852.94E-5109147IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-4112146IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLNGV AKHGPGKWKN ILKDPDFAPF LTQRSNIDLK DKWRNLSVSN  60
ATQGSKDKSR LPKVKTLALT LPSSNAQNFA HADTSADVLM DDPSSNAVDG KNAPRYNAMI  120
FEALSAIKDT NGCDIGAIVH FIELKGELIP GSDVRTS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068940.11e-103telomere repeat-binding factor 4
SwissprotF4I7L11e-51TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A067KX391e-102A0A067KX39_JATCU; Uncharacterized protein
STRINGcassava4.1_023473m6e-84(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.19e-55MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]