PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S13092.20

Common Name

JCGZ_21574, LOC105650157

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 361aa MW: 41447.3 Da PI: 8.5015

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S13092.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.4	1.2e-31	82	135	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Jcr4S13092.20 82 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 135 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-30	78	136	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.628	78	138	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-14	80	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	82	137	IPR006447	Myb domain, plants
Pfam	PF00249	8.7E-9	83	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MLDHQEKSIG SGGEEQAENT SLASSSQKCS SFDLNEEASC SEEDEDEKIT EEGSSSANNN 60 NSSSERNERK STVRQYVRSK MPRLRWTPDL HLSFVHAVER LGGQERATPK LVLQLMNVRG 120 LSIAHVKSHL QMYRSKKLDE AGQVLSQAYR SMQRRDNTNT GMLPPQKQFR MENGGFVFAR 180 NSVLPRITAF GHNPFPLHSS FSQRPFNFRT NFSSHQHWSF DQNEVRRQIN SMTSKDHEQG 240 LDATMRIGPL RPSRFLEEKR WPPMEMVKNR WKIMENPNEV TCNTEPEAHP RSAGSTLFAS 300 NDSISHFNCF KATFEPPFRL ELNQEKVLPD LQLRLSQRVE LDENKSNCRS KQEISTKLSL 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MLDHQEKSIG SGGEEQAENT SLASSSQKCS SFDLNEEASC SEEDEDEKIT EEGSSSANNN  60
NSSSERNERK STVRQYVRSK MPRLRWTPDL HLSFVHAVER LGGQERATPK LVLQLMNVRG  120
LSIAHVKSHL QMYRSKKLDE AGQVLSQAYR SMQRRDNTNT GMLPPQKQFR MENGGFVFAR  180
NSVLPRITAF GHNPFPLHSS FSQRPFNFRT NFSSHQHWSF DQNEVRRQIN SMTSKDHEQG  240
LDATMRIGPL RPSRFLEEKR WPPMEMVKNR WKIMENPNEV TCNTEPEAHP RSAGSTLFAS  300
NDSISHFNCF KATFEPPFRL ELNQEKVLPD LQLRLSQRVE LDENKSNCRS KQEISTKLSL  360
S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	83	137	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	83	137	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	83	137	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	83	137	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	83	137	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	83	137	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	83	137	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	83	137	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	83	137	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	83	137	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	83	137	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	83	137	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012092425.1	0.0	putative two-component response regulator ARR19
Refseq	XP_020541068.1	0.0	putative two-component response regulator ARR19
TrEMBL	A0A067JEB2	0.0	A0A067JEB2_JATCU; Uncharacterized protein
STRING	EOY27983	1e-110	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-37	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	105650157

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]