PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S13987.10
Common NameJCGZ_01232
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 343aa    MW: 36539.7 Da    PI: 6.2389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S13987.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1761110255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f +ae+Aa+a+++a+  l+g
  Jcr4S13987.10  61 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFASAEDAARAYDRAAIILYG 110
                    59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-1961118No hitNo description
Gene3DG3DSA:3.30.730.108.2E-2961118IPR001471AP2/ERF domain
PROSITE profilePS5103222.06261118IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2061118IPR016177DNA-binding domain
SMARTSM003806.8E-3861124IPR001471AP2/ERF domain
PfamPF008471.7E-1161106IPR001471AP2/ERF domain
PRINTSPR003671.0E-96273IPR001471AP2/ERF domain
PRINTSPR003671.0E-984100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDSNPSQDPI TTATTTSETI TTTTIAAGVT SDTTSDSNNT SSDSAGKKCK GRGGPDNSKF  60
RYRGVRQRSW GKWVAEIREP RKRTRKWLGT FASAEDAARA YDRAAIILYG SRAQLNLQPL  120
NSSSAQNSSS SSSSRGGGSG GNGSSSSSTQ TLRPLLPRPS GFGFSFSLSS TSMASPAAVA  180
AASSGFVPYG VYQNLPNVVG SSTVLCTNNI VQNPQEQQIT MSSNIPYQYQ YQNPLSDYTS  240
SLSAGHDPSS IPTTSYQNLN YDHNPHHQQQ QEHGLYEDIS SLVGSVGSSL SLSSNTQPII  300
APANQDPVMH VGPGSPSLWP LTNDDEYPPS SIWDYGDPSL FDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1862117359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020540955.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A067L8M80.0A0A067L8M8_JATCU; Uncharacterized protein
STRINGcassava4.1_031773m1e-112(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.18e-35ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]