PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S14260.10

Common Name

JCGZ_22420

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 144aa MW: 16152.5 Da PI: 4.467

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S14260.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.6	1.4e-10	65	88	1	24
--S---SGGGGTS--TTTTT-SS- CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFa 24 y +C+++ +tG+C yGd+CkF+ Jcr4S14260.10 65 YQPDICKDYKETGYCGYGDSCKFM 88 67789******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.96E-8	62	96	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.003	64	91	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.76	64	92	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-8	65	88	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-10	65	95	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MADSGESQQP APVSGNEKLY KGIHGYTDHK AGFRREQTIS SEKAGGSHGP LRASAHIRVS 60 ARFDYQPDIC KDYKETGYCG YGDSCKFMYD RGDYKPGWQL EKEWEEAEKI RKRNLALGED 120 EDGLGESDDN EDDDDSLSFA ESLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	4e-27	16	131	149	257	RING finger protein 113A
5z58_M	4e-27	16	131	149	257	RING finger protein 113A
6ff4_t	4e-27	16	131	149	257	RING finger protein 113A
6ff7_t	4e-27	16	131	149	257	RING finger protein 113A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065710.1	5e-78	zinc finger CCCH domain-containing protein 1
Refseq	XP_012065716.1	5e-78	zinc finger CCCH domain-containing protein 1
Refseq	XP_020532881.1	5e-78	zinc finger CCCH domain-containing protein 1
Swissprot	Q8GX84	9e-70	C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBL	A0A067L9A6	1e-102	A0A067L9A6_JATCU; Uncharacterized protein
STRING	cassava4.1_011914m	3e-74	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7082	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	4e-70	C3H family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]