PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S14739.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 252aa    MW: 27924.9 Da    PI: 4.3859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S14739.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.93.5e-18654150
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50
                   lppGfrFhPtd elv++yLk+kv gk+l++ ++i+e+diyk+ PwdLp +
  Jcr4S14739.10  6 LPPGFRFHPTDVELVKYYLKRKVLGKNLHF-DAIAEIDIYKYAPWDLPDR 54
                   79**************************99.99**************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-294105IPR003441NAC domain
PROSITE profilePS5100515.6176155IPR003441NAC domain
PfamPF023651.2E-8782IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGKKTLPPGF RFHPTDVELV KYYLKRKVLG KNLHFDAIAE IDIYKYAPWD LPDRSNLRTG  60
DLKXGKAPKG ERTDWVMYEY RLKEKELDAK GVAQDAYVLC SIFKKDGPGP RNGAQYGAPF  120
KEEDWDDDDD EEEEFNGVGI VSSSGMPVLV PINQNSSLAT SSHVPEVTCT GSIGICPYEA  180
LPSASNATGV VVDDYVAAAD PPQYVNENEG DDILAMLANF YAENPSNLGE NDMNEFFGHR  240
LVIWFSLSVS GH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-18610515168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753200.0KC775320.1 Jatropha curcas NAC transcription factor 042 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066614.11e-146NAC domain-containing protein 82 isoform X2
RefseqXP_020533208.11e-146NAC domain-containing protein 82 isoform X1
RefseqXP_020533209.11e-148NAC domain-containing protein 82 isoform X3
SwissprotQ9FY826e-56NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A067LDP21e-147A0A067LDP2_JATCU; Uncharacterized protein
TrEMBLR4N7M81e-147R4N7M8_JATCU; NAC transcription factor 042
STRINGcassava4.1_009240m2e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-51NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]