PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S15477.10
Common NameLOC105637224
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 252aa    MW: 29579.9 Da    PI: 4.8247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S15477.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.15.8e-22181411127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevd.....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                    lp G+rF+Ptdeelv +yLk k+e++  l++   +k++d     +y+ +Pw++  +   ++   +f++ ++ k   +kr+ r t sg+W+++ + k
  Jcr4S15477.10  18 LPCGYRFDPTDEELVFYYLKSKLEKTLtLDV---VKTLDgdpntLYDDDPWNIF-H---SQLTGFFYVFTKLKGMADKRRDRRTPSGTWRNQNR-K 105
                    699*******************998763444...44443344459999*****5.2...334669999999999999999999*******9876.9 PP

            NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                    ++l+++g+   +kk + f +   +k ++  W+m e++
  Jcr4S15477.10 106 PILDSEGNILYVKKQFRFEET-GKKNQNGLWLMTEFS 141
                    99999*************954.445589********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-2413159IPR003441NAC domain
PROSITE profilePS5100526.7818159IPR003441NAC domain
PfamPF023652.1E-1619141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAARSLILPS GLAEATELPC GYRFDPTDEE LVFYYLKSKL EKTLTLDVVK TLDGDPNTLY  60
DDDPWNIFHS QLTGFFYVFT KLKGMADKRR DRRTPSGTWR NQNRKPILDS EGNILYVKKQ  120
FRFEETGKKN QNGLWLMTEF SSKYEGRKGE YVLCRIYNKD ALGKKREYSV EKEEGNGKSK  180
KMRQDNLGYT YWENENFGDP NPSLERQDNI VSAYCENENF GDPNPRLERT PEHEDNDDSL  240
FWDDILFYDQ CP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753620.0KC775362.1 Jatropha curcas NAC transcription factor 084 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076028.11e-180NAC domain-containing protein 19
TrEMBLR4NHT01e-179R4NHT0_JATCU; NAC transcription factor 084
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-15NAC domain containing protein 28
Publications ? help Back to Top
  1. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]