PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16185.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 748aa    MW: 85452.4 Da    PI: 8.616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16185.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.91.6e-13457150
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.vikevdiykvePwdLpkk 50
                   lppGfrF Pt+eel+++yL++k+eg++   +++ + +i+ +diy+++P +Lp  
  Jcr4S16185.10  4 LPPGFRFYPTEEELISFYLHNKLEGRRedlNRIMDrIIPVLDIYEHNPCELPLP 57
                   79*************************66633333269999**********942 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-13358IPR003441NAC domain
PROSITE profilePS5100512.7734172IPR003441NAC domain
PfamPF023651.5E-5545IPR003441NAC domain
PfamPF142448.1E-105690IPR029472Gag-polypeptide of LTR copia-type
PfamPF037322.8E-7110180IPR005162Retrotransposon gag domain
PfamPF139766.9E-8416494IPR025724GAG-pre-integrase domain
PROSITE profilePS509948.954505593IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.109.4E-14507599IPR012337Ribonuclease H-like domain
SuperFamilySSF530988.91E-14508583IPR012337Ribonuclease H-like domain
PfamPF006659.4E-10508595IPR001584Integrase, catalytic core
PfamPF077271.2E-40608715IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566723.74E-7610706No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MEDLPPGFRF YPTEEELISF YLHNKLEGRR EDLNRIMDRI IPVLDIYEHN PCELPLPLND  60
YNYHSWARAM KIALASKNKL GFVTGAIPAP VDQNSELYNI WSRCNTMVIS WIQKAVSPNI  120
AQSILWIDNA SKVWRDLQIR FSQGNNYRIA DLLDEISSLK QGDSTVNDFY TQLKILWDEL  180
LVLRPIPACT CVNACNCGAV TQYRRNFEHE QQERQINHSS QSESKIMLNK SYRPNFGAKS  240
FPQQTSRGQR FPAQINKTRK CTFCNGTNHT IDSCYKKIGY PPGLKPRNNY NSGRPNVIAN  300
AAVNAVYGDQ QNPSYYQNAS EFYDPNSNVF PIQAVENKFT NCTSSATQQQ PSEATISFTL  360
DQYNKIMTLI NQDSADGTAH TINREHAVNS IMATNDQQSA ISISNQTQKT AKVFHGLYKL  420
LQNEDPKKFT GVRQNKAVLA ATTLFSTQCS NNSLWHFRFG HVPKTRLSIL CTKHPEFHMN  480
KTDLPCDICH MAKQKKLSFP VSVTMSQSPF DLLHMDIWGP VGTVSWIGHR YFLTIVDDHT  540
RFLWVYLLKE KSEVRPLVKQ FVQMAATRFD KRVKSIRSDN EPKTYKQAIK HLVWREAMDM  600
ELEALALNNA WTVVPLPPNR VPIGCKWVYK TKLKSDGSIE RHKARLVAKG YTQVEGQDFF  660
DTFSLVAKVT TIRLLLTLAT MKGWFLEQLD VNNAFLHGDL HEEIYMEALL GLQVPDGSVY  720
DIILAGNDSS EISLVKDSLD AKFKIKDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119710.0AP011971.1 Jatropha curcas DNA, clone: JHL22C18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084475.10.0uncharacterized protein LOC105643862
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-15NAC domain containing protein 90