PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16208.10
Common NameJCGZ_03430, LOC105632295
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 216aa    MW: 24093.5 Da    PI: 5.9545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16208.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1867117256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+  ++g+
  Jcr4S16208.10  67 NYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAASTIKGH 117
                    69****998.**********843...6**********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.21E-3366126No hitNo description
PfamPF008475.8E-1366117IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2167125IPR016177DNA-binding domain
PROSITE profilePS5103222.77467124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-3267125IPR001471AP2/ERF domain
SMARTSM003805.6E-3767130IPR001471AP2/ERF domain
PRINTSPR003671.8E-106879IPR001471AP2/ERF domain
PRINTSPR003671.8E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MECEAQPTAS SSSSSSSTSS FPSDPMNNSN KMNSPKSSKR DQEVVNKSNN ERNNKKAKAE  60
NAKIYPNYRG VRMRQWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA ASTIKGHSAH  120
LNFPELAHKL PRPASSSPKD IQAAAALAAA LNYQNDNEVA DLIISSQLGE PEPQWPDITE  180
ASHDTQESED DTFIDLPDLL QDISHQFNEF CYLSSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1651124272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070028.11e-159ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ77e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A067L7161e-158A0A067L716_JATCU; Uncharacterized protein
STRINGcassava4.1_034027m9e-73(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.14e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]