PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S16323.10

Common Name

JCGZ_08915, LOC105644117

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 428aa MW: 46112.6 Da PI: 7.3936

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S16323.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.5	5.8e-39	89	196	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+ +tgt++++a+++ ++s +ss+ + s++ Jcr4S16323.10 89 PTTKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIVATGTGTIPANFStLNVSLRSSGTTISAPpsksapls 184 5789*****************************************************************999777777777774444344333444 PP TCP 89 ...........k 89 + Jcr4S16323.10 185 fhnslgfydpsN 196 444444443330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-39	95	278	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.907	95	149	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MESQSNNQHQ SSSNYNKNST KSQKQESTVS SLQLLSFENQ SHESTSTATT VAAAATASAA 60 STDPFVGSIS NQISVNPSLS NSNSAITKPT TKRPSKDRHT KVDGRGRRIR MPALCAARVF 120 QLTRELGHKS DGETIEWLLQ QAEPAIIVAT GTGTIPANFS TLNVSLRSSG TTISAPPSKS 180 APLSFHNSLG FYDPSNNNSN GSENRRVIGS NTSMLGFHHQ LYPQNLVSDE NYMRKTYRED 240 LFKETSITTQ HQSTEPEIHT NSSKTRTGVQ DQEQQQQQVG STRPSNILAT PATMWAVAAA 300 PAATNGSNAF WMLPVGGSAT NSSAMAETQM WTFPTAGVTP MQRLNFSTGS GGRVSPIQLG 360 SMIVQQPLVR GQQLGLGVTE SSMRILGSVN ANYSNSRVDL GMNLEQHNNQ ENQQQGSDSA 420 EENPNDSE

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MESQSNNQHQ SSSNYNKNST KSQKQESTVS SLQLLSFENQ SHESTSTATT VAAAATASAA  60
STDPFVGSIS NQISVNPSLS NSNSAITKPT TKRPSKDRHT KVDGRGRRIR MPALCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPAIIVAT GTGTIPANFS TLNVSLRSSG TTISAPPSKS  180
APLSFHNSLG FYDPSNNNSN GSENRRVIGS NTSMLGFHHQ LYPQNLVSDE NYMRKTYRED  240
LFKETSITTQ HQSTEPEIHT NSSKTRTGVQ DQEQQQQQVG STRPSNILAT PATMWAVAAA  300
PAATNGSNAF WMLPVGGSAT NSSAMAETQM WTFPTAGVTP MQRLNFSTGS GGRVSPIQLG  360
SMIVQQPLVR GQQLGLGVTE SSMRILGSVN ANYSNSRVDL GMNLEQHNNQ ENQQQGSDSA  420
EENPNDSE

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084808.1	0.0	transcription factor TCP23
Refseq	XP_012084875.1	0.0	transcription factor TCP23
Refseq	XP_020538857.1	0.0	transcription factor TCP23
Refseq	XP_020538865.1	0.0	transcription factor TCP23
Swissprot	Q9LQF0	8e-77	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A067LEV9	0.0	A0A067LEV9_JATCU; Uncharacterized protein
STRING	cassava4.1_008256m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	3e-68	TCP family protein

Link Out ? help Back to Top
Entrez Gene	105644117

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]