PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16451.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 255aa    MW: 29445.3 Da    PI: 5.0704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16451.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-091222446
                     HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                     W++Ia++++ gRt++++k++w++
    Jcr4S16451.20  1 WSKIAAHFP-GRTDNEIKNHWNT 22
                     *********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-7132IPR009057Homeodomain-like
CDDcd001672.61E-5122No hitNo description
PROSITE profilePS5129418.088128IPR017930Myb domain
PfamPF002491.1E-6122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-11128IPR009057Homeodomain-like
SuperFamilySSF497641.41E-27117245IPR008978HSP20-like chaperone
Gene3DG3DSA:2.60.40.7901.4E-28118248IPR008978HSP20-like chaperone
PROSITE profilePS0103121.175144242IPR002068Alpha crystallin/Hsp20 domain
PfamPF000111.9E-21144246IPR002068Alpha crystallin/Hsp20 domain
CDDcd064642.72E-22144242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
WSKIAAHFPG RTDNEIKNHW NTRIKKKLKI LGIDPQTHKR IDTEEAETAK EESKVKDYQI  60
ESESLRKEFD AGSVLNSCTD KSESFCSRIE ESVIKEESQQ NWIDNVDSLL SWDGFKLWDR  120
FPTARTVQQM METMERMIGR TPWEIKEGET EYKMRFDMPG MTKEDVKVWV EEKMLVLKAE  180
KVPEKNNVNG AQNGIEEEEE DGGWSAKSYG KYSCRIALPE NIQFEKIKAE VKDGVLYITI  240
PKASTTGKIL GINVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5nms_A8e-33117255114325.3 kDa heat shock protein, chloroplastic
5nms_C8e-33117255114325.3 kDa heat shock protein, chloroplastic
5nms_D8e-33117255114325.3 kDa heat shock protein, chloroplastic
5nms_G8e-33117255114325.3 kDa heat shock protein, chloroplastic
5nms_I8e-33117255114325.3 kDa heat shock protein, chloroplastic
5nms_J8e-33117255114325.3 kDa heat shock protein, chloroplastic
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0175530.0KM017553.1 Jatropha curcas isolate A MYB117 (MYB117) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085581.12e-79small heat shock protein, chloroplastic
TrEMBLA0A067K3C84e-78A0A067K3C8_JATCU; Uncharacterized protein
STRINGXP_008221979.14e-67(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.15e-17myb domain protein 20