PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S16816.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 76aa    MW: 8671.62 Da    PI: 4.4885
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S16816.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.91.3e-271270260
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
   HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                   Fl+k+y++++d+++++++sws+n nsfvv++  ef+k++LpkyFkhsnf+SFvRQLn+Y
  Jcr4S16816.10 12 FLSKTYDMVDDPSTNSVVSWSSNDNSFVVWNVPEFQKELLPKYFKHSNFSSFVRQLNTY 70
                   9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-29470IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-21873IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-251070IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-231270IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-161235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-165062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-166375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MESVTSNSVP PFLSKTYDMV DDPSTNSVVS WSSNDNSFVV WNVPEFQKEL LPKYFKHSNF  60
SSFVRQLNTY VGDVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-203702087Heat shock factor protein 1
5d5v_B8e-203702087Heat shock factor protein 1
5d5v_D8e-203702087Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070226.13e-41heat stress transcription factor A-1b
RefseqXP_020534386.13e-41heat stress transcription factor A-1b
SwissprotQ9SCW58e-32HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A067L5Z16e-40A0A067L5Z1_JATCU; Uncharacterized protein
STRINGcassava4.1_031943m1e-40(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-21heat shock factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]