PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S17057.20
Common NameJCGZ_01683, LOC105647967
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 726aa    MW: 80878.6 Da    PI: 5.3015
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S17057.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07121143427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C ff++ G C  GdrC F Hgp
  Jcr4S17057.20 121 VPCIFFQK-GLCLKGDRCAFLHGP 143
                    69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8032655IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-112781No hitNo description
SMARTSM003560.00182754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.6155783IPR000571Zinc finger, CCCH-type
SMARTSM003560.0555982IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.48E-5118142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5122143IPR000571Zinc finger, CCCH-type
PfamPF146080.024122142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MIAATQEQQQ QQQGTGTASS VEEEALKRNT DCVYFLASPL TCKKGSECEY RHSEYARVNP  60
RDCYFWLNGN CLNPKCGFRH PPLDGLFGNQ VSAAAGSSLP PSHMAMAPAM HAPQSTGKQA  120
VPCIFFQKGL CLKGDRCAFL HGPNPTSNKV MGTSSTDHAS LKKSSGGPQK SIQEQKMPQR  180
NFSKAVEIPA EAKLAPKPET VPPRNGLGVK SIDDELPKYK ATSIPHVVNG NSSRFNRLHQ  240
SQLPDDHVFQ DGKDSDEFLR ECSPGFDVLV DDELRNSDYH HGEDQYGRRG HEGRNLNPGD  300
EYDVGLAADY SSVADIDRET YRDLRGYDTY SRMQGQYAWE QHRASSERVP AGPAHIERRG  360
YSKADSPEPI DESDLRYRLS KHRSVSGLRS VVSHDFVPDN HVEERGYRGS SRMDSHNLSS  420
HENAISGRLR GRIKLPGRSP NGSDPRVERE LDRGRNRPRL SPGRSQIPSH QARIRDRIKA  480
RVEEDYSSEG RNLRGARMRR EITDEERDTD FAAPKSLAEL KGIRGTEIGQ VQQSLRKRKQ  540
LEDYQPSEGD LSFEGPMPLS EILKRKRGAE AAASGIRTSS RNKEDDYLKE SKESLLGSSN  600
TVSEAQGGHS SIKDESNKQV LKDEEEAKSE IAGTIGTAGE KTEVALGQHA SRLPNPSEPE  660
TEDGIMIDDG MEDHEYEADD QREGDYEYEQ VDEGEYYEEG ENAEAEESVD EEDGDDFAKK  720
IGVMFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490499RNLRGARMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089583.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A067JSN90.0A0A067JSN9_JATCU; Uncharacterized protein
STRINGcassava4.1_002468m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]