PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S17282.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 254aa    MW: 28161.9 Da    PI: 4.3671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S17282.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-141456148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++    ++ + t++++k++w+++l
    Jcr4S17282.10 14 KGPWTPEEDIILVSYIQEHGPGNWRS----VP-TNTDNDIKNYWNTHL 56
                     79************************....55.5566********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-20562IPR009057Homeodomain-like
SuperFamilySSF466892.01E-14862IPR009057Homeodomain-like
PROSITE profilePS5129420.333960IPR017930Myb domain
SMARTSM007172.3E-101358IPR001005SANT/Myb domain
PfamPF002491.1E-121456IPR001005SANT/Myb domain
CDDcd001671.87E-111656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTDNDIKN YWNTHLKKKL  60
KKFQSAALDS IPTTSERSRN VYNLSPISSR NVTNSPSSSS TYASSTENIS RLLQGWMTSS  120
PKTTFYGNNT TTNDGASIII GNSPVGNDNV KGVAVQEMSN GLISHEEFES ILSFENLNNI  180
SAWDKCTCDS ASEEKEAENK KKQKSEINNN PPLSFLEKWL LDESTGNSDQ VLEEEEGEGE  240
GEEEDEAMEL SPIF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347300.0KM034730.1 Jatropha curcas clone JcMYB110 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070355.21e-131myb-related protein 306
SwissprotB3VTV78e-55MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A067KXC01e-129A0A067KXC0_JATCU; MYB family protein
STRINGcassava4.1_031668m1e-66(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2226344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.15e-33myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]