PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S17456.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 271aa    MW: 30425.1 Da    PI: 4.1107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S17456.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-20188237355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr+++ +g+++AeIrdp++ng   r++lg++ t+e+Aa a+++a+ k++g
  Jcr4S17456.30 188 YTGVRRRP-WGKYAAEIRDPKKNG--SRIWLGTYETPEDAALAYDRAAFKMRG 237
                    99******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.222187245IPR001471AP2/ERF domain
CDDcd000183.10E-31187247No hitNo description
Gene3DG3DSA:3.30.730.101.2E-31187246IPR001471AP2/ERF domain
SMARTSM003803.0E-38187251IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-23187246IPR016177DNA-binding domain
PRINTSPR003671.6E-12188199IPR001471AP2/ERF domain
PfamPF008471.4E-13188237IPR001471AP2/ERF domain
PRINTSPR003671.6E-12227247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MWGENTSPPA DDFFFLEPIQ HYLLEDNFGN LMNSFDDSIH KPFKFDDLDD FTLDCSILGD  60
YESNSQFDFT VPETTMAAPV ESKSQDAATS SEEVEILINS FNNSSSTSST LIFTDNTSNY  120
SPFNIDDLDD FTIDSSIFGD SEFISQFDFP VAETTMPTVE QKSQEAAASF EEAVVTHNSN  180
TPSKGWQYTG VRRRPWGKYA AEIRDPKKNG SRIWLGTYET PEDAALAYDR AAFKMRGSKA  240
KLNFPHLIGS DDYEPIRVTN KRGSPERSSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-32183252170ATERF1
3gcc_A6e-32183252170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083860.20.0ethylene-responsive transcription factor 13
SwissprotQ8L9K11e-48ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A067KAL31e-139A0A067KAL3_JATCU; Uncharacterized protein
STRINGcassava4.1_030919m1e-67(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-48ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]