PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S17589.10

Common Name

JCGZ_23231, LOC105647433

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 203aa MW: 23080.5 Da PI: 11.7489

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S17589.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.3e-05	130	177	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ +rE +R + +++ L +l+P + +K s + Le+A++YI L Jcr4S17589.10 130 RKKEVARENKRLPILEDRLRVLSRLVPGC-----RKTSFTSLLEEATDYIAAL 177 667789********************9.....8*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.10.90.10	5.3E-4	9	86	IPR029034	Cystine-knot cytokine
Gene3D	G3DSA:4.10.280.10	1.3E-7	126	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-10	128	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.712	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MASLISSLES NSDTSQEFKQ RKKRRKLTHE TQNQSQNGET NNRNISKTRW KTQAEQQIYS 60 SKLLEALRRS RRTSSISSRG REIRETADKV LAGAAKGKTR WSRAILAGRL RLRKVKKVRK 120 VKVTGERRLR KKEVARENKR LPILEDRLRV LSRLVPGCRK TSFTSLLEEA TDYIAALEMQ 180 VKAMTTLTEI LAAGGDAQVN SAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	25	KKRRK
2	108	117	RLRLRKVKKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088908.1	1e-143	transcription factor bHLH149
TrEMBL	A0A067JKQ5	1e-141	A0A067JKQ5_JATCU; Uncharacterized protein
STRING	cassava4.1_016663m	6e-96	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1387	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	1e-25	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105647433

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]