PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S18217.10
Common NameJCGZ_14754
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 124aa    MW: 13368.8 Da    PI: 7.9709
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S18217.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26047.45.6e-1576123147
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllk 47 
                    +CaaCk+lrr+C+++C la yfp++  p++f +v   FG s v+++l+
  Jcr4S18217.10  76 PCAACKILRRQCTDKCYLASYFPSTTePHNFTVVDSRFGLSDVHEFLQ 123
                    7***********************7659****************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.3375124IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-1376123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAKNPFVFPS TFSNSQSSIP SSSSSSPSPS FNSSSSYPSS PSLNSPFQPS HQSLPLPPSQ  60
TSSSHFSLPS KDVVGPCAAC KILRRQCTDK CYLASYFPST TEPHNFTVVD SRFGLSDVHE  120
FLQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020535325.11e-50transcriptional corepressor LEUNIG
TrEMBLA0A067K8U33e-50A0A067K8U3_JATCU; Uncharacterized protein
STRINGVIT_13s0019g03700.t012e-13(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.16e-15LOB domain-containing protein 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]