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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Jcr4S18792.20 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 198aa MW: 22261.8 Da PI: 6.6691 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 27.4 | 1.1e-08 | 88 | 153 | 20 | 88 |
FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
++++ n+e+ +t+ C + k+ +++++ + r+r++ ++gC ak+ + + dg+ +++k++ eHnH+
Jcr4S18792.20 88 SETSINREVQFKTYACHRACKAGNNSHN---SMRERPSAHIGCMAKICASSQADGRLRINKVSFEHNHH 153
3446789999***********9999888...999**********************************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.7E-6 | 87 | 153 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 198 aa Download sequence Send to blast |
MDENEKDNFD SEVLKYNVNK EKDVEEEGER QGSIIIVELV KGLQVGNKYL KQMEIVHEMG 60 SNREDGNAKE TASSEEACDD EGHSDSRSET SINREVQFKT YACHRACKAG NNSHNSMRER 120 PSAHIGCMAK ICASSQADGR LRINKVSFEH NHHAPSKACF LVQHRVIQPH VKRTLEVNDF 180 AGIRACKTFL ALVGEFRG |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012065290.1 | 2e-30 | protein FAR-RED IMPAIRED RESPONSE 1 | ||||
| Refseq | XP_020532726.1 | 2e-30 | protein FAR-RED IMPAIRED RESPONSE 1 | ||||
| TrEMBL | A0A067L9B7 | 6e-29 | A0A067L9B7_JATCU; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF27077 | 2 | 3 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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