PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S19737.10

Common Name

JCGZ_06797, LOC105634755

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 257aa MW: 29899.8 Da PI: 9.6559

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S19737.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.4	1.3e-40	5	138	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pG+rF Pt+eel+++yL++++e+k+ +++vi+ + iy++ Pw+Lp+ + + ++w+fF++r++++a+g r+nr t++gyWkatg Jcr4S19737.10 5 APGIRFYPTEEELLSFYLHHRLEAKQedliRVMDRVIPVLYIYEFSPWQLPQfsgvYSRRDPEQWFFFIPRQESEARGGRPNRLTTDGYWKATGCP 100 69*********************9777433345699999******556543333556***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++ vg+k+t+vfykgrap+g+kt+W m+ey+ Jcr4S19737.10 101 GYVYSSNNRCVGVKRTMVFYKGRAPRGRKTEWKMNEYK 138 ***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-43	3	167	IPR003441	NAC domain
PROSITE profile	PS51005	44.587	4	167	IPR003441	NAC domain
Pfam	PF02365	2.8E-20	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MENFAPGIRF YPTEEELLSF YLHHRLEAKQ EDLIRVMDRV IPVLYIYEFS PWQLPQFSGV 60 YSRRDPEQWF FFIPRQESEA RGGRPNRLTT DGYWKATGCP GYVYSSNNRC VGVKRTMVFY 120 KGRAPRGRKT EWKMNEYKAI DREASSSSTG ASLSLRHEFS LCRVYKKAKC LRSFDRRPVG 180 METRQLMVHG DEVARPSTHP KRKRSSAESS SLGGHGYPSQ ETGQQSNNNI PMAVIHNEPL 240 WDWDQLKDWR DYGGLGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-31	3	167	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-31	3	167	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-31	3	167	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-31	3	167	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-31	3	167	19	168	NAC domain-containing protein 19
3swm_B	5e-31	3	167	19	168	NAC domain-containing protein 19
3swm_C	5e-31	3	167	19	168	NAC domain-containing protein 19
3swm_D	5e-31	3	167	19	168	NAC domain-containing protein 19
3swp_A	5e-31	3	167	19	168	NAC domain-containing protein 19
3swp_B	5e-31	3	167	19	168	NAC domain-containing protein 19
3swp_C	5e-31	3	167	19	168	NAC domain-containing protein 19
3swp_D	5e-31	3	167	19	168	NAC domain-containing protein 19
4dul_A	4e-31	3	167	16	165	NAC domain-containing protein 19
4dul_B	4e-31	3	167	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775317	1e-174	KC775317.1 Jatropha curcas NAC transcription factor 039 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073055.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-74	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	R4NHM9	0.0	R4NHM9_JATCU; NAC transcription factor 039
STRING	XP_002530539.1	1e-114	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-74	NAC domain containing protein 90

Link Out ? help Back to Top
Entrez Gene	105634755

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]