PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S19763.20

Common Name

JCGZ_25478, LOC105646421

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25022.2 Da PI: 5.9222

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S19763.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	97	151	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+ + +++ ++ LA++l+Lt rqV vWFqNrRa+ k Jcr4S19763.20 97 RKKLRLTKDQSALLEDSFKVHTTLNPVQKHALAEQLNLTARQVEVWFQNRRARTK 151 78889************************************************98 PP
2	HD-ZIP_I/II	121.1	5.8e-39	97	185	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE+sF+ +++L+p +K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eL+ Jcr4S19763.20 97 RKKLRLTKDQSALLEDSFKVHTTLNPVQKHALAEQLNLTARQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSEENTRLKKEVQELQ-Y 185 69*************************************************************************************8.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.94E-18	91	154	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.228	93	153	IPR001356	Homeobox domain
SMART	SM00389	3.3E-15	95	157	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-15	97	151	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-17	97	151	IPR009057	Homeodomain-like
CDD	cd00086	3.81E-15	97	154	No hit	No description
PROSITE pattern	PS00027	0	128	151	IPR017970	Homeobox, conserved site
Pfam	PF02183	4.0E-9	153	184	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.4E-17	153	199	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEGQNPQEEY CNTELGLTLG LNGNIPKGQD RNNCKHSSTK SGLCLDLSFN LCPKEEKEDE 60 EEEEEEEKSI GARQGHEEHA NNKRIDFVNV DNISISRKKL RLTKDQSALL EDSFKVHTTL 120 NPVQKHALAE QLNLTARQVE VWFQNRRART KLKQTEVDCE FLKKCCESLS EENTRLKKEV 180 QELQYLKSIG TSSQLCLHFP MCPSCEKTAA FGLGCGPLHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	SRKKLRL
2	145	153	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031172	2e-31	KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087666.1	1e-161	homeobox-leucine zipper protein HAT22
Swissprot	P46665	6e-50	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A067JXN2	1e-160	A0A067JXN2_JATCU; Uncharacterized protein
STRING	XP_002527693.1	1e-62	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5664	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-52	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Entrez Gene	105646421

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]