PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S20723.10
Common NameJCGZ_16625, LOC105642338
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26051.4 Da    PI: 8.3967
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S20723.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.5e-2064117356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Jcr4S20723.10  64 KKKRLTSDQLESLERSFQEEVKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 117
                    56779************************************************9 PP
2HD-ZIP_I/II117.67.2e-3863154192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekk+rl+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d ++ e+++L++ev +L++ l+
  Jcr4S20723.10  63 EKKKRLTSDQLESLERSFQEEVKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKEEFDVVSVEKQKLQEEVMKLKAILR 154
                    69*************************************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1949121IPR009057Homeodomain-like
PROSITE profilePS5007117.73459119IPR001356Homeobox domain
SMARTSM003891.0E-1762123IPR001356Homeobox domain
PfamPF000462.4E-1764117IPR001356Homeobox domain
CDDcd000861.03E-1664120No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2165126IPR009057Homeodomain-like
PRINTSPR000313.9E-59099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000313.9E-599115IPR000047Helix-turn-helix motif
PfamPF021831.8E-7119153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDWHTNLGTF VSRPETSFNF LYNYNHDQYT PGMDMKHPAM AKTPHGLVVP AAMDKISFGS  60
SQEKKKRLTS DQLESLERSF QEEVKLDPDR KMKLSRELGL QPRQIAVWFQ NRRARWKAKQ  120
LERLYDALKE EFDVVSVEKQ KLQEEVMKLK AILREQATKN QVSTGYTEIS GEETVESKSV  180
AIWSSSGKPR GTSHQHQISE CNYTMNVDEY NPVSSPYWAV LPTYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082539.11e-170putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR09e-57ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A067JZ671e-169A0A067JZ67_JATCU; Uncharacterized protein
STRINGXP_002528635.11e-140(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-59homeobox 51
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]