PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S21276.10
Common NameJCGZ_04579
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26834.8 Da    PI: 9.9188
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S21276.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.5e-171866149
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   k+ien+  r +tfskRr gi KKA EL +L++ae+a ++fs+ gk + +
  Jcr4S21276.10 18 KKIENEDDRLITFSKRRSGIYKKACELVTLTGAEIAFVVFSPAGKPFSF 66
                   68******************************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.1091070IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-271069IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-241181IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-181232IPR002100Transcription factor, MADS-box
PfamPF003191.7E-211966IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-183247IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-184768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MASNRGKKTK GRQKIEMKKI ENEDDRLITF SKRRSGIYKK ACELVTLTGA EIAFVVFSPA  60
GKPFSFAHPS IESVTNRFLG KEILISPDST HPLVEAHRQI RIEELNHHHN DVLQQLDVVK  120
DKGKNLKHKA TGIEKMGWWD TPIEELNVKE MIQMESAFND IRISLISKLK EKVDSNNIGA  180
SSCSSSSSSA QPPIDPSSAN MINPFVPINE PNPPVFPSGY DYGHRTVLVF FFFKKKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1k6o_B1e-16689592Serum response factor
1k6o_C1e-16689592Serum response factor
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072058.21e-167agamous-like MADS-box protein AGL62
TrEMBLA0A067KNX81e-165A0A067KNX8_JATCU; Uncharacterized protein
STRINGXP_002519714.13e-91(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-38AGAMOUS-like 57
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]