PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S21289.10
Common NameGRAS28, JCGZ_16682, LOC105641161
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 435aa    MW: 47448.7 Da    PI: 5.6046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S21289.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.22e-115724323374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lLl+cAe+v+ ++l  a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l++++ + ++s++  +a++ ++ +sP++kfsh+ta
  Jcr4S21289.10  72 GLLLQCAECVAMDNLDDATDLLPEISELSSPFGSSPERVGAYFAHALQARVVSSCLGTYSPLTSKSLTLTQSQKIYNAFQSYNSISPLIKFSHFTA 167
                    58******************************************************************9*************************** PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    NqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef+++  k  +  ++++L
  Jcr4S21289.10 168 NQAIFQALDGEDCVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPVEGKIGNVTDVSQL 259
                    ***************************************************....9**************************7666666679**** PP

           GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                     v+++Ea++V++++  h l+d ++s       +L+l+  l+Pk+++ veq+++h +++Fl rf+eal+yysalfd+l  +l+++s er++vE++l+
  Jcr4S21289.10 260 GVRSREAVVVHWMH--HCLYDITGSDLG----TLRLLTLLRPKLITTVEQDLSH-GGNFLGRFVEALHYYSALFDALGDGLGADSVERHTVEQQLF 348
                    ************99..777777777777....9*********************.789************************************** PP

           GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                    g ei+n+va  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll++++++gy++  ee+g+l lgWkd +++++SaWr
  Jcr4S21289.10 349 GCEIRNIVAVGGPKRTGEVK-VERWGDELKRVGFQPVSLGGNPATQASLLLSMFPWKGYTLVeEENGCLKLGWKDLSVLTASAWR 432
                    **************998887.9*************************************97637799999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.31444411IPR005202Transcription factor GRAS
PfamPF035147.1E-11372432IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MLQSLVPQSP INSTPTTTNS TSSMKTKRVD RDASGDDPSS KRPNFSSEAT VSGDKTTAEE  60
DSTETTGLRL LGLLLQCAEC VAMDNLDDAT DLLPEISELS SPFGSSPERV GAYFAHALQA  120
RVVSSCLGTY SPLTSKSLTL TQSQKIYNAF QSYNSISPLI KFSHFTANQA IFQALDGEDC  180
VHVIDLDIMQ GLQWPGLFHI LASRSKKIRS MRITGFGSSS ELLESTGRRL ADFASSLGLP  240
FEFHPVEGKI GNVTDVSQLG VRSREAVVVH WMHHCLYDIT GSDLGTLRLL TLLRPKLITT  300
VEQDLSHGGN FLGRFVEALH YYSALFDALG DGLGADSVER HTVEQQLFGC EIRNIVAVGG  360
PKRTGEVKVE RWGDELKRVG FQPVSLGGNP ATQASLLLSM FPWKGYTLVE EENGCLKLGW  420
KDLSVLTASA WRPLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-164534331379Protein SCARECROW
5b3h_D1e-164534331379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052520.0KM405252.1 Jatropha curcas GRAS28 protein (GRAS28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081040.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A067K5Y20.0A0A067K5Y2_JATCU; GRAS28 protein
STRINGcassava4.1_007780m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]