PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S22649.10
Common NameJCGZ_23631, LOC105629514
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 218aa    MW: 23929.5 Da    PI: 6.5242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S22649.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.9e-164898156
            AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                   + ykGVr +k +g+Wv+e+r+       +  r++lg+f  +e+Aa+a++ a k+l+g+
  Jcr4S22649.10 48 PVYKGVR-RK-NGKWVSELRElQ-----TkSRIWLGTFPNPEMAARAYDVAVKALRGN 98
                   68****8.66.8******99944.....35*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-94897IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-2549106IPR001471AP2/ERF domain
PROSITE profilePS5103218.29449105IPR001471AP2/ERF domain
SMARTSM003804.6E-2749111IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1749106IPR016177DNA-binding domain
CDDcd000181.48E-2550107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEDSSSSSSS QSSPSYSYSS SSSSITSHQI GVQKRKAERK KFRETRHPVY KGVRRKNGKW  60
VSELRELQTK SRIWLGTFPN PEMAARAYDV AVKALRGNTA SLNFPETAHL LPQVGSTSIK  120
DIQCAALEAA GVHGGGGDVQ CASSSSSLKA SVEEGYNNNN NNNNDNKMFL DEEELFNMPA  180
LLDSMAEGLI LTPPAMKRGF SWNDTKEEDT VDLTLWSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066513.11e-162dehydration-responsive element-binding protein 1F
TrEMBLA0A067L2K31e-161A0A067L2K3_JATCU; Uncharacterized protein
STRINGXP_002528599.15e-77(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-44C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]