PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S24239.10

Common Name

JCGZ_15619, LOC105630455

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 405aa MW: 44501.7 Da PI: 7.8249

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S24239.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	68	128	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s Jcr4S24239.10 68 PDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTS 128 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-32	55	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-32	70	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
ERSAKETTND KQENSTADDS KQKETTTSSD NNEKPKTSTA ETEKESSNNK NGEQSETSDS 60 QEKPLKKPDK ILPCPRCNSM DTKFCYFNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG 120 RRKNKNTSAS NYRHIMVSEA FKLAQVGNST TNSTVLNFGS SADSTLYESV ASVLNLSDQT 180 SNNLRNGYKP NRTEHRIHGS ENGDDRLSGS SITVSTPSEK VISNCNMQET VPYASGQVAC 240 FPGPQWPCPW NSTPYCHSGF PVSFYPAPPY WGCSVPNPWN LASLNPCATP SSNPGSALGK 300 HSREGNIILN SNNVEDGSRE SDCSERNALV PKTLRIDHLN EAAESSIWTT LGIKSEKSNF 360 NGGGLFQGFQ SKNIEERNYI NADKSSVLQA NPAALSRSLK FQEST

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

ERSAKETTND KQENSTADDS KQKETTTSSD NNEKPKTSTA ETEKESSNNK NGEQSETSDS  60
QEKPLKKPDK ILPCPRCNSM DTKFCYFNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG  120
RRKNKNTSAS NYRHIMVSEA FKLAQVGNST TNSTVLNFGS SADSTLYESV ASVLNLSDQT  180
SNNLRNGYKP NRTEHRIHGS ENGDDRLSGS SITVSTPSEK VISNCNMQET VPYASGQVAC  240
FPGPQWPCPW NSTPYCHSGF PVSFYPAPPY WGCSVPNPWN LASLNPCATP SSNPGSALGK  300
HSREGNIILN SNNVEDGSRE SDCSERNALV PKTLRIDHLN EAAESSIWTT LGIKSEKSNF  360
NGGGLFQGFQ SKNIEERNYI NADKSSVLQA NPAALSRSLK FQEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067660.1	0.0	cyclic dof factor 1
TrEMBL	A0A067KYL1	0.0	A0A067KYL1_JATCU; Uncharacterized protein
STRING	cassava4.1_030452m	1e-161	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-81	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	105630455

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]